Variant report

Variant	rs11013498
Chromosome Location	chr10:23741230-23741231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23737577..23740196-chr10:23740591..23742744,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10828460	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828461	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828473	1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013476	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013478	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013479	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs11013480	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013527	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013539	1.00[EUR][1000 genomes]
rs11013544	1.00[EUR][1000 genomes]
rs11013558	1.00[EUR][1000 genomes]
rs11013561	1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219829	0.95[CHB][hapmap];1.00[EUR][1000 genomes]
rs12254101	0.99[ASN][1000 genomes]
rs12569512	1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12571384	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572169	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1398027	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923259	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16923277	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995981	0.85[ASN][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2089880	0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3898626	1.00[EUR][1000 genomes]
rs4442437	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748885	0.91[ASN][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748891	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748895	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748904	1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59547906	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61412542	1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079349	0.88[JPT][hapmap]
rs7079490	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079866	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs7080700	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7083306	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084431	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7096353	0.88[JPT][hapmap]
rs7097072	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7098076	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122432	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122435	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122436	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122437	0.92[ASN][1000 genomes]
rs7905070	0.97[ASN][1000 genomes]
rs7919581	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs867892	1.00[EUR][1000 genomes]
rs945778	1.00[EUR][1000 genomes]
rs9633627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23732200-23747800	Weak transcription	NHEK	skin
4	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23732800-23744000	Weak transcription	Right Ventricle	heart
6	chr10:23735000-23744400	Weak transcription	Stomach Mucosa	stomach
7	chr10:23735400-23742600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:23736800-23741600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:23738600-23742800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:23739000-23743000	Weak transcription	Esophagus	oesophagus
12	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
13	chr10:23740800-23741400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:23740800-23741600	Enhancers	Primary B cells from cord blood	blood
15	chr10:23741000-23741400	Enhancers	Adipose Nuclei	Adipose
16	chr10:23741000-23741400	Enhancers	Psoas Muscle	Psoas
17	chr10:23741000-23741400	Enhancers	Right Atrium	heart
18	chr10:23741000-23741400	Enhancers	Spleen	Spleen
19	chr10:23741200-23741400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:23741200-23741600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:23741200-23742000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links