Variant report

Variant	rs867892
Chromosome Location	chr10:23830025-23830026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23827963..23830375-chr10:23832627..23834235,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10828460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	0.86[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013479	1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013481	0.86[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs11013491	1.00[EUR][1000 genomes]
rs11013492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013496	1.00[EUR][1000 genomes]
rs11013497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013498	1.00[EUR][1000 genomes]
rs11013527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013556	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219829	0.80[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571384	1.00[EUR][1000 genomes]
rs12572169	1.00[EUR][1000 genomes]
rs1398027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	0.85[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923259	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes]
rs2089880	1.00[EUR][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442437	1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	0.85[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748891	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes]
rs58305149	1.00[EUR][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61412542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	1.00[EUR][1000 genomes]
rs7079866	0.86[CHB][hapmap]
rs7080700	1.00[EUR][1000 genomes]
rs7083306	1.00[EUR][1000 genomes]
rs7084431	1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7097072	1.00[EUR][1000 genomes]
rs7098076	1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122437	0.85[AMR][1000 genomes]
rs7919581	1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9633627	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633648	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23827600-23830600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr10:23827600-23831200	Enhancers	Fetal Thymus	thymus
3	chr10:23827800-23831200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:23827800-23833600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:23828000-23831000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:23828200-23830400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:23828200-23830800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr10:23828200-23831200	Enhancers	Thymus	Thymus
9	chr10:23828200-23831400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:23828200-23831800	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:23828400-23830600	Enhancers	Fetal Lung	lung
12	chr10:23828400-23831000	Flanking Active TSS	Dnd41	blood
13	chr10:23828400-23831600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:23828600-23830200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:23828600-23830200	Enhancers	Fetal Kidney	kidney
16	chr10:23828800-23830600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:23829000-23830200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:23829200-23830200	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:23829200-23830400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr10:23829200-23831800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:23829800-23830200	Enhancers	Brain Hippocampus Middle	brain
22	chr10:23829800-23830200	Weak transcription	Fetal Stomach	stomach
23	chr10:23829800-23830400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:23830000-23831000	Enhancers	Primary B cells from cord blood	blood
25	chr10:23830000-23831000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:23830000-23831000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:23830000-23831400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:23830000-23833400	Enhancers	Primary neutrophils fromperipheralblood	blood

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