Variant report

Variant	rs1398027
Chromosome Location	chr10:23747026-23747027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10828460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013479	1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013496	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013498	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013556	0.85[AMR][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.98[ASN][1000 genomes]
rs12569512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12571384	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12572169	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16923259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16923277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995981	0.84[ASN][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2089880	1.00[EUR][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748882	1.00[AFR][1000 genomes]
rs4748885	0.90[ASN][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59547906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61412542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079866	0.98[ASN][1000 genomes]
rs7080700	1.00[EUR][1000 genomes]
rs7083306	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084431	1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7097072	1.00[EUR][1000 genomes]
rs7098076	1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74122437	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7905070	0.96[ASN][1000 genomes]
rs7919581	1.00[EUR][1000 genomes]
rs867892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9633648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23732200-23747800	Weak transcription	NHEK	skin
4	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
7	chr10:23741400-23748800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
9	chr10:23742400-23750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:23745200-23748000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:23746000-23748600	Enhancers	Primary B cells from cord blood	blood
12	chr10:23746200-23749200	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:23746400-23747800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:23746600-23747400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:23746600-23747600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:23746600-23747600	Enhancers	Psoas Muscle	Psoas
17	chr10:23746600-23748600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:23746600-23751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:23746800-23747600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr10:23746800-23747800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:23747000-23747600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:23747000-23748000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links