Variant report

Variant	rs12572169
Chromosome Location	chr10:23725062-23725063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10828460	1.00[EUR][1000 genomes]
rs10828461	1.00[EUR][1000 genomes]
rs10828473	1.00[EUR][1000 genomes]
rs11013468	0.94[ASN][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013473	0.97[ASN][1000 genomes]
rs11013474	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11013476	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013478	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013480	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013481	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013482	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013483	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013484	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013492	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013494	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013495	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013496	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013497	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013498	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013527	1.00[EUR][1000 genomes]
rs11013539	1.00[EUR][1000 genomes]
rs11013544	1.00[EUR][1000 genomes]
rs11013558	1.00[EUR][1000 genomes]
rs11013561	1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12219829	1.00[EUR][1000 genomes]
rs12254101	0.82[ASN][1000 genomes]
rs12569512	1.00[EUR][1000 genomes]
rs12571102	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571351	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12571384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398027	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1553905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923233	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16923259	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923277	1.00[EUR][1000 genomes]
rs1995981	0.96[ASN][1000 genomes]
rs2089876	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089878	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2089879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2089880	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35182895	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3898626	1.00[EUR][1000 genomes]
rs4442437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747470	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747471	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4747474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747475	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4747476	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748885	0.84[ASN][1000 genomes]
rs4748886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748887	0.97[ASN][1000 genomes]
rs4748889	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748891	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748895	1.00[EUR][1000 genomes]
rs4748904	1.00[EUR][1000 genomes]
rs57566783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58056630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58604095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58614955	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59547906	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61412542	1.00[EUR][1000 genomes]
rs6482276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7079490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079866	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7080700	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7087230	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092162	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7096353	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7097072	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100463	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100487	0.82[AFR][1000 genomes]
rs7100518	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73602555	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73602556	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74122431	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74122432	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74122435	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74122436	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74122437	0.85[ASN][1000 genomes]
rs7905070	0.80[ASN][1000 genomes]
rs7919581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs867892	1.00[EUR][1000 genomes]
rs945778	1.00[EUR][1000 genomes]
rs9633627	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9633648	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23721800-23727200	Weak transcription	HMEC	breast
3	chr10:23721800-23727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23721800-23727400	Weak transcription	NHEK	skin
5	chr10:23722000-23726200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:23722200-23725600	Weak transcription	Stomach Mucosa	stomach
9	chr10:23722200-23727000	Weak transcription	Hela-S3	cervix
10	chr10:23723200-23727000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:23723400-23726800	Weak transcription	Primary B cells from cord blood	blood
12	chr10:23724400-23727000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:23724800-23727200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:23725000-23725200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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