Variant report

Variant	rs11013495
Chromosome Location	chr10:23740109-23740110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23734822..23737617-chr10:23738406..23741055,2	MCF-7	breast:
2	chr10:23737577..23740196-chr10:23740591..23742744,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10828460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013479	1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013556	0.85[AMR][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.99[ASN][1000 genomes]
rs12569512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12571384	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572169	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1398027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16923277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995981	0.85[ASN][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2089880	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748885	0.91[ASN][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748895	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59547906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61412542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079866	0.99[ASN][1000 genomes]
rs7080700	1.00[EUR][1000 genomes]
rs7083306	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084431	1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7097072	1.00[EUR][1000 genomes]
rs7098076	1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122437	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7905070	0.97[ASN][1000 genomes]
rs7919581	1.00[EUR][1000 genomes]
rs867892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23732200-23747800	Weak transcription	NHEK	skin
5	chr10:23732400-23741200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:23732600-23740400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:23732600-23740400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:23732800-23741000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:23732800-23744000	Weak transcription	Right Ventricle	heart
11	chr10:23733000-23740400	Weak transcription	Fetal Brain Female	brain
12	chr10:23733000-23740600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:23733000-23741000	Weak transcription	Psoas Muscle	Psoas
14	chr10:23735000-23744400	Weak transcription	Stomach Mucosa	stomach
15	chr10:23735400-23742600	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:23736800-23741600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:23738000-23740400	Enhancers	Primary B cells from cord blood	blood
18	chr10:23738200-23740800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:23738600-23740600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:23738600-23742800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:23738800-23740400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:23739000-23741000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:23739000-23741000	Weak transcription	Right Atrium	heart
25	chr10:23739000-23741000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:23739000-23741000	Weak transcription	Spleen	Spleen
27	chr10:23739000-23741200	Weak transcription	Left Ventricle	heart
28	chr10:23739000-23743000	Weak transcription	Esophagus	oesophagus
29	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
30	chr10:23739200-23740400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:23739800-23740800	Enhancers	GM12878-XiMat	blood
32	chr10:23739800-23741000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:23739800-23741200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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