Variant report

Variant	rs11013556
Chromosome Location	chr10:23821358-23821359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10828460	0.85[AMR][1000 genomes]
rs10828461	0.85[AMR][1000 genomes]
rs10828473	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11013474	0.85[CHB][hapmap]
rs11013481	0.85[CHB][hapmap]
rs11013484	0.85[CHB][hapmap]
rs11013492	0.85[AMR][1000 genomes]
rs11013494	0.85[AMR][1000 genomes]
rs11013495	0.85[AMR][1000 genomes]
rs11013497	0.85[AMR][1000 genomes]
rs11013527	0.85[AMR][1000 genomes]
rs11013539	0.85[AMR][1000 genomes]
rs11013544	0.85[AMR][1000 genomes]
rs11013558	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11013561	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12217320	0.85[AMR][1000 genomes]
rs12219829	0.85[AMR][1000 genomes]
rs12569512	0.85[AMR][1000 genomes]
rs12571351	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs1398027	0.85[AMR][1000 genomes]
rs16923233	0.85[CHB][hapmap]
rs16923259	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs16923277	0.85[AMR][1000 genomes]
rs3898626	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4747471	0.85[AMR][1000 genomes]
rs4747475	0.85[CHB][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs4747476	0.85[AMR][1000 genomes]
rs4748891	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs4748895	0.85[AMR][1000 genomes]
rs4748904	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58614955	0.85[AMR][1000 genomes]
rs59547906	0.85[AMR][1000 genomes]
rs60998671	0.82[AFR][1000 genomes]
rs61412542	0.85[AMR][1000 genomes]
rs7079866	0.85[CHB][hapmap]
rs867892	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs945778	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9633627	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs9633648	0.85[CHB][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23819800-23821600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr10:23820000-23821600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:23820400-23823200	Weak transcription	Primary T cells from cord blood	blood
4	chr10:23820800-23823200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:23820800-23823200	Weak transcription	Dnd41	blood

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