Variant report

Variant	rs61412542
Chromosome Location	chr10:23711324-23711325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23707420..23709381-chr10:23709579..23712222,2	MCF-7	breast:
2	chr10:23710434..23711949-chr10:23726274..23728400,2	MCF-7	breast:
3	chr10:23710737..23713285-chr10:23727540..23729458,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10828460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013479	1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[EUR][1000 genomes]
rs11013491	1.00[EUR][1000 genomes]
rs11013492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013496	1.00[EUR][1000 genomes]
rs11013497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013498	1.00[EUR][1000 genomes]
rs11013527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013556	0.85[AMR][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571384	1.00[EUR][1000 genomes]
rs12572169	1.00[EUR][1000 genomes]
rs1398027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes]
rs2089880	1.00[EUR][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes]
rs58305149	1.00[EUR][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	1.00[EUR][1000 genomes]
rs7080700	1.00[EUR][1000 genomes]
rs7083306	1.00[EUR][1000 genomes]
rs7084431	1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7097072	1.00[EUR][1000 genomes]
rs7098076	1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122437	0.85[AMR][1000 genomes]
rs7919581	1.00[EUR][1000 genomes]
rs867892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23709000-23712200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23709400-23712000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23709800-23712000	Enhancers	Stomach Mucosa	stomach
4	chr10:23710800-23711400	Enhancers	NHEK	skin
5	chr10:23711000-23711400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:23711000-23711400	Flanking Active TSS	Hela-S3	cervix
7	chr10:23711200-23711400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:23711200-23712200	Enhancers	Placenta	Placenta

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