Variant report

Variant	rs12569512
Chromosome Location	chr10:23803075-23803076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10828460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013479	1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[EUR][1000 genomes]
rs11013491	1.00[EUR][1000 genomes]
rs11013492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013496	1.00[EUR][1000 genomes]
rs11013497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013498	1.00[EUR][1000 genomes]
rs11013527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013556	0.85[AMR][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12217320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571384	1.00[EUR][1000 genomes]
rs12572169	1.00[EUR][1000 genomes]
rs1398027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes]
rs2089880	1.00[EUR][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4747476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes]
rs58305149	1.00[EUR][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61412542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079490	1.00[EUR][1000 genomes]
rs7080700	1.00[EUR][1000 genomes]
rs7083306	1.00[EUR][1000 genomes]
rs7084431	1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7097072	1.00[EUR][1000 genomes]
rs7098076	1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122437	0.85[AMR][1000 genomes]
rs7919581	1.00[EUR][1000 genomes]
rs867892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23800800-23803200	Enhancers	Hela-S3	cervix
2	chr10:23801800-23803200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23802800-23803400	Enhancers	Placenta	Placenta
4	chr10:23803000-23803800	Enhancers	HMEC	breast
5	chr10:23803000-23803800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links