Variant report

Variant	rs4748887
Chromosome Location	chr10:23716176-23716177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23698540..23700935-chr10:23715186..23717309,2	MCF-7	breast:
2	chr10:23715110..23718111-chr10:23726420..23729994,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11013468	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013473	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013474	0.86[ASN][1000 genomes]
rs11013476	0.86[ASN][1000 genomes]
rs11013478	0.87[ASN][1000 genomes]
rs11013479	1.00[ASN][1000 genomes]
rs11013480	0.87[ASN][1000 genomes]
rs11013481	0.87[ASN][1000 genomes]
rs11013482	0.99[ASN][1000 genomes]
rs11013483	0.97[ASN][1000 genomes]
rs11013484	0.85[ASN][1000 genomes]
rs11013491	0.81[ASN][1000 genomes]
rs11013501	1.00[CEU][hapmap]
rs12254101	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12266879	1.00[CEU][hapmap]
rs12571102	0.95[ASN][1000 genomes]
rs12571351	0.82[ASN][1000 genomes]
rs12571384	0.97[ASN][1000 genomes]
rs12572169	0.97[ASN][1000 genomes]
rs1398026	1.00[CEU][hapmap]
rs1511825	1.00[CEU][hapmap]
rs1553905	0.99[ASN][1000 genomes]
rs16923233	0.87[ASN][1000 genomes]
rs16923259	0.81[ASN][1000 genomes]
rs1995981	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2089876	0.97[ASN][1000 genomes]
rs2089878	0.90[ASN][1000 genomes]
rs2089879	0.98[ASN][1000 genomes]
rs2089880	0.95[ASN][1000 genomes]
rs35182895	0.90[ASN][1000 genomes]
rs3934842	1.00[CEU][hapmap]
rs4442437	1.00[ASN][1000 genomes]
rs4747470	0.99[ASN][1000 genomes]
rs4747471	0.87[ASN][1000 genomes]
rs4747474	0.99[ASN][1000 genomes]
rs4748885	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748886	1.00[ASN][1000 genomes]
rs4748889	0.87[ASN][1000 genomes]
rs57566783	1.00[ASN][1000 genomes]
rs58056630	0.98[ASN][1000 genomes]
rs58305149	0.86[ASN][1000 genomes]
rs58604095	1.00[ASN][1000 genomes]
rs58614955	0.87[ASN][1000 genomes]
rs59547906	0.87[ASN][1000 genomes]
rs6482276	1.00[ASN][1000 genomes]
rs7079490	0.95[ASN][1000 genomes]
rs7079866	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs7080700	1.00[ASN][1000 genomes]
rs7083306	0.94[ASN][1000 genomes]
rs7084145	1.00[CEU][hapmap]
rs7084431	0.99[ASN][1000 genomes]
rs7087230	1.00[ASN][1000 genomes]
rs7092162	0.91[ASN][1000 genomes]
rs7094796	1.00[CEU][hapmap]
rs7096353	1.00[ASN][1000 genomes]
rs7097072	1.00[ASN][1000 genomes]
rs7097167	1.00[CEU][hapmap]
rs7097185	1.00[CEU][hapmap]
rs7098076	1.00[ASN][1000 genomes]
rs7100463	1.00[ASN][1000 genomes]
rs7100518	1.00[ASN][1000 genomes]
rs73602555	0.89[ASN][1000 genomes]
rs73602556	0.97[ASN][1000 genomes]
rs74122431	0.87[ASN][1000 genomes]
rs74122432	0.87[ASN][1000 genomes]
rs74122435	0.87[ASN][1000 genomes]
rs74122436	0.87[ASN][1000 genomes]
rs74122437	0.87[ASN][1000 genomes]
rs7905070	0.84[EUR][1000 genomes]
rs7919581	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23712000-23719000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links