Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23698540..23700935-chr10:23715186..23717309,2	MCF-7	breast:
2	chr10:23715110..23718111-chr10:23726420..23729994,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11013479	0.80[AFR][1000 genomes]
rs1511822	1.00[ASN][1000 genomes]
rs1511825	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1553905	0.80[AFR][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs4586049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4747470	0.82[AFR][1000 genomes]
rs4747474	0.80[AFR][1000 genomes]
rs4748886	0.80[AFR][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58604095	0.80[AFR][1000 genomes]
rs58870551	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7078874	1.00[ASN][1000 genomes]
rs7084657	1.00[ASN][1000 genomes]
rs7087230	0.80[AFR][1000 genomes]
rs7097167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7100487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7100518	0.80[AFR][1000 genomes]
rs73602552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602557	1.00[ASN][1000 genomes]
rs73602558	1.00[ASN][1000 genomes]
rs73602560	1.00[ASN][1000 genomes]
rs73602561	1.00[ASN][1000 genomes]
rs7902534	0.83[ASN][1000 genomes]
rs7904709	1.00[ASN][1000 genomes]
rs7917171	1.00[ASN][1000 genomes]
rs7919581	0.80[AFR][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23712000-23719000	Weak transcription	Stomach Mucosa	stomach

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