Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23728188..23731002-chr10:23742023..23745714,4	MCF-7	breast:
2	chr10:23744620..23747012-chr10:23752553..23755040,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1511822	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1511825	1.00[ASN][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs4586049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[ASN][1000 genomes]
rs58870551	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482275	1.00[ASN][1000 genomes]
rs7078874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7084657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097167	0.88[ASN][1000 genomes]
rs7100487	1.00[ASN][1000 genomes]
rs73602552	1.00[ASN][1000 genomes]
rs73602553	1.00[ASN][1000 genomes]
rs73602557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7904709	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917171	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23732200-23747800	Weak transcription	NHEK	skin
4	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
7	chr10:23741400-23746600	Weak transcription	Psoas Muscle	Psoas
8	chr10:23741400-23748800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
10	chr10:23741600-23746000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:23742400-23750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:23742600-23746200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:23744200-23745200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:23744200-23745200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:23744200-23745200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:23744200-23745400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:23744200-23746600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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