Variant report

Variant	rs73602557
Chromosome Location	chr10:23731824-23731825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23731583..23733567-chr10:23742543..23744623,2	MCF-7	breast:
2	chr10:23728096..23730469-chr10:23730500..23732412,3	MCF-7	breast:
3	chr10:23729334..23732028-chr10:23747440..23749180,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1511822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1511825	1.00[ASN][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs4586049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[ASN][1000 genomes]
rs58870551	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482275	1.00[ASN][1000 genomes]
rs7078874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7084657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097167	0.88[ASN][1000 genomes]
rs7100487	1.00[ASN][1000 genomes]
rs73602552	1.00[ASN][1000 genomes]
rs73602553	1.00[ASN][1000 genomes]
rs73602558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7904709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727400-23732200	Active TSS	Right Atrium	heart
2	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
3	chr10:23729200-23732200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
4	chr10:23729400-23732000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:23729400-23732400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr10:23729800-23732000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:23729800-23732000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr10:23729800-23732600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:23729800-23734400	Weak transcription	K562	blood
10	chr10:23729800-23736400	Weak transcription	Gastric	stomach
11	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
12	chr10:23729800-23738400	Weak transcription	Lung	lung
13	chr10:23730000-23732000	Flanking Active TSS	Fetal Heart	heart
14	chr10:23730000-23732400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:23730000-23735800	Weak transcription	HUVEC	blood vessel
16	chr10:23730200-23732200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:23730200-23733000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:23730400-23734800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:23730600-23732000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:23730600-23732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:23730600-23732000	Enhancers	HMEC	breast
22	chr10:23730800-23732000	Enhancers	Fetal Intestine Large	intestine
23	chr10:23730800-23732000	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
24	chr10:23730800-23732200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr10:23730800-23734400	Weak transcription	Stomach Mucosa	stomach
26	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:23731000-23732000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:23731000-23732000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr10:23731000-23732000	Enhancers	Fetal Brain Male	brain
30	chr10:23731000-23732200	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:23731000-23732200	Active TSS	Brain Cingulate Gyrus	brain
32	chr10:23731000-23732200	Enhancers	NHEK	skin
33	chr10:23731000-23732400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:23731000-23732400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:23731000-23732400	Enhancers	NHDF-Ad	bronchial
36	chr10:23731000-23732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:23731000-23733000	Weak transcription	HepG2	liver
38	chr10:23731000-23733200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:23731000-23735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
41	chr10:23731200-23732000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:23731200-23732000	Flanking Active TSS	GM12878-XiMat	blood
43	chr10:23731200-23732200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:23731200-23732200	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr10:23731200-23732400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:23731200-23733000	Enhancers	Colon Smooth Muscle	Colon
47	chr10:23731200-23734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:23731400-23732000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:23731400-23732000	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood

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