Variant report

Variant	rs1511822
Chromosome Location	chr10:23729523-23729524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23729334..23732028-chr10:23747440..23749180,2	MCF-7	breast:
2	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224215	Chromatin interaction
ENSG00000179133	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1511825	1.00[ASN][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs4586049	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[ASN][1000 genomes]
rs58870551	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482275	1.00[ASN][1000 genomes]
rs7078874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7084657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097167	0.88[ASN][1000 genomes]
rs7100487	1.00[ASN][1000 genomes]
rs73602552	1.00[ASN][1000 genomes]
rs73602553	1.00[ASN][1000 genomes]
rs73602557	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602558	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602560	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902534	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7904709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917171	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3407210	chr10:23727196-23730019	Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3372977	chr10:23727571-23730319	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727200-23729800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:23727200-23729800	Active TSS	Stomach Smooth Muscle	stomach
3	chr10:23727200-23730000	Active TSS	Colon Smooth Muscle	Colon
4	chr10:23727200-23730200	Active TSS	Colonic Mucosa	Colon
5	chr10:23727200-23730600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:23727200-23731400	Active TSS	HSMMtube	muscle
7	chr10:23727200-23731600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:23727200-23731800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:23727400-23729600	Active TSS	Muscle Satellite Cultured Cells	--
10	chr10:23727400-23729600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:23727400-23729600	Active TSS	Fetal Intestine Small	intestine
12	chr10:23727400-23729600	Active TSS	Fetal Kidney	kidney
13	chr10:23727400-23729800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:23727400-23729800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:23727400-23729800	Active TSS	Brain Anterior Caudate	brain
16	chr10:23727400-23729800	Active TSS	Gastric	stomach
17	chr10:23727400-23729800	Active TSS	Lung	lung
18	chr10:23727400-23730000	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr10:23727400-23730800	Active TSS	Aorta	Aorta
20	chr10:23727400-23730800	Active TSS	Psoas Muscle	Psoas
21	chr10:23727400-23730800	Active TSS	NHLF	lung
22	chr10:23727400-23731000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr10:23727400-23731400	Active TSS	Left Ventricle	heart
24	chr10:23727400-23731400	Active TSS	Ovary	ovary
25	chr10:23727400-23732200	Active TSS	Right Atrium	heart
26	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
27	chr10:23727600-23729600	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr10:23727600-23729600	Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr10:23727600-23729600	Active TSS	Small Intestine	intestine
30	chr10:23727600-23729600	Active TSS	NHDF-Ad	bronchial
31	chr10:23727600-23729800	Active TSS	Spleen	Spleen
32	chr10:23727600-23730400	Active TSS	Brain Substantia Nigra	brain
33	chr10:23727600-23730600	Active TSS	Fetal Intestine Large	intestine
34	chr10:23727600-23730600	Active TSS	Rectal Smooth Muscle	rectum
35	chr10:23727600-23730800	Active TSS	Hela-S3	cervix
36	chr10:23727800-23729600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:23727800-23729600	Active TSS	Primary monocytes fromperipheralblood	blood
38	chr10:23727800-23729800	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr10:23727800-23730000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr10:23727800-23730000	Active TSS	HSMM	muscle
41	chr10:23728400-23730200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr10:23728400-23730600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:23728800-23730600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:23729000-23729600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:23729000-23729600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:23729000-23729800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:23729000-23729800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr10:23729000-23729800	Bivalent/Poised TSS	Thymus	Thymus
49	chr10:23729000-23730000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr10:23729000-23730000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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