Variant report
| Variant | rs56411865 |
|---|---|
| Chromosome Location | chr10:23802266-23802267 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1511822 | 0.93[ASN][1000 genomes] |
| rs1511825 | 0.93[ASN][1000 genomes] |
| rs16923290 | 0.93[ASN][1000 genomes] |
| rs16923324 | 1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16923337 | 1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16923381 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3864843 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3924036 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4586049 | 0.93[ASN][1000 genomes] |
| rs56874947 | 0.93[ASN][1000 genomes] |
| rs58870551 | 0.82[ASN][1000 genomes] |
| rs6482275 | 0.93[ASN][1000 genomes] |
| rs7078874 | 0.93[ASN][1000 genomes] |
| rs7084657 | 0.93[ASN][1000 genomes] |
| rs7097167 | 0.82[ASN][1000 genomes] |
| rs7100487 | 0.93[ASN][1000 genomes] |
| rs73602552 | 0.93[ASN][1000 genomes] |
| rs73602553 | 0.93[ASN][1000 genomes] |
| rs73602557 | 0.93[ASN][1000 genomes] |
| rs73602558 | 0.93[ASN][1000 genomes] |
| rs73602560 | 0.93[ASN][1000 genomes] |
| rs73602561 | 0.93[ASN][1000 genomes] |
| rs7904709 | 0.93[ASN][1000 genomes] |
| rs7917171 | 0.93[ASN][1000 genomes] |
| rs9651373 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831811 | chr10:23734326-23913370 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv466835 | chr10:23801555-23869175 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv550215 | chr10:23801555-23869175 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23800800-23803200 | Enhancers | Hela-S3 | cervix |
| 2 | chr10:23801800-23803200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
