Variant report

Variant	rs73602558
Chromosome Location	chr10:23732509-23732510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23731583..23733567-chr10:23742543..23744623,2	MCF-7	breast:
2	chr10:23732163..23734973-chr10:23736467..23739152,3	K562	blood:
3	chr10:23732386..23735333-chr10:23736238..23738738,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1511822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1511825	1.00[ASN][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs4586049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[ASN][1000 genomes]
rs58870551	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482275	1.00[ASN][1000 genomes]
rs7078874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7084657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097167	0.88[ASN][1000 genomes]
rs7100487	1.00[ASN][1000 genomes]
rs73602552	1.00[ASN][1000 genomes]
rs73602553	1.00[ASN][1000 genomes]
rs73602557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7904709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
2	chr10:23729800-23732600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23729800-23734400	Weak transcription	K562	blood
4	chr10:23729800-23736400	Weak transcription	Gastric	stomach
5	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
6	chr10:23729800-23738400	Weak transcription	Lung	lung
7	chr10:23730000-23735800	Weak transcription	HUVEC	blood vessel
8	chr10:23730200-23733000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:23730400-23734800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:23730800-23734400	Weak transcription	Stomach Mucosa	stomach
11	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:23731000-23732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:23731000-23733000	Weak transcription	HepG2	liver
14	chr10:23731000-23733200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:23731000-23735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
17	chr10:23731200-23733000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:23731200-23734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:23731600-23732600	Enhancers	Liver	Liver
21	chr10:23731600-23732600	Enhancers	Pancreas	Pancrea
22	chr10:23731600-23732600	Enhancers	Osteobl	bone
23	chr10:23731600-23732800	Enhancers	Spleen	Spleen
24	chr10:23731600-23733000	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr10:23731600-23733000	Enhancers	Psoas Muscle	Psoas
26	chr10:23731600-23737400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
28	chr10:23731800-23732600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:23731800-23732600	Genic enhancers	Dnd41	blood
30	chr10:23731800-23732800	Genic enhancers	Adipose Nuclei	Adipose
31	chr10:23731800-23733000	Genic enhancers	Left Ventricle	heart
32	chr10:23731800-23733200	Strong transcription	Fetal Lung	lung
33	chr10:23731800-23734400	Weak transcription	Small Intestine	intestine
34	chr10:23731800-23736200	Weak transcription	Thymus	Thymus
35	chr10:23731800-23738400	Weak transcription	Aorta	Aorta
36	chr10:23731800-23738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:23732000-23732600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:23732000-23732600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:23732000-23732600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:23732000-23732600	Genic enhancers	Brain Anterior Caudate	brain
43	chr10:23732000-23732600	Enhancers	Fetal Heart	heart
44	chr10:23732000-23732600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:23732000-23732800	Genic enhancers	Primary B cells from cord blood	blood
46	chr10:23732000-23732800	Enhancers	Brain Substantia Nigra	brain
47	chr10:23732000-23732800	Genic enhancers	Ovary	ovary
48	chr10:23732000-23733000	Genic enhancers	Fetal Brain Female	brain
49	chr10:23732000-23733200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:23732000-23733400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links