Variant report

Variant	rs4586049
Chromosome Location	chr10:23730191-23730192
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23729334..23732028-chr10:23747440..23749180,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1511822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1511825	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16923290	1.00[ASN][1000 genomes]
rs16923324	1.00[ASN][1000 genomes]
rs16923337	1.00[ASN][1000 genomes]
rs16923381	0.93[ASN][1000 genomes]
rs3864843	0.93[ASN][1000 genomes]
rs3924036	0.93[ASN][1000 genomes]
rs56411865	0.93[ASN][1000 genomes]
rs56874947	1.00[ASN][1000 genomes]
rs58870551	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482275	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7078874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7084657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097167	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7100487	1.00[ASN][1000 genomes]
rs73602552	1.00[ASN][1000 genomes]
rs73602553	1.00[ASN][1000 genomes]
rs73602557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73602561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7904709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3372977	chr10:23727571-23730319	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727200-23730200	Active TSS	Colonic Mucosa	Colon
2	chr10:23727200-23730600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23727200-23731400	Active TSS	HSMMtube	muscle
4	chr10:23727200-23731600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23727200-23731800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:23727400-23730800	Active TSS	Aorta	Aorta
7	chr10:23727400-23730800	Active TSS	Psoas Muscle	Psoas
8	chr10:23727400-23730800	Active TSS	NHLF	lung
9	chr10:23727400-23731000	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr10:23727400-23731400	Active TSS	Left Ventricle	heart
11	chr10:23727400-23731400	Active TSS	Ovary	ovary
12	chr10:23727400-23732200	Active TSS	Right Atrium	heart
13	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
14	chr10:23727600-23730400	Active TSS	Brain Substantia Nigra	brain
15	chr10:23727600-23730600	Active TSS	Fetal Intestine Large	intestine
16	chr10:23727600-23730600	Active TSS	Rectal Smooth Muscle	rectum
17	chr10:23727600-23730800	Active TSS	Hela-S3	cervix
18	chr10:23728400-23730200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr10:23728400-23730600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:23728800-23730600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:23729000-23731000	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr10:23729000-23731400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr10:23729200-23730200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:23729200-23730200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr10:23729200-23730200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:23729200-23730200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:23729200-23730200	Flanking Active TSS	HMEC	breast
28	chr10:23729200-23730200	Flanking Active TSS	NH-A	brain
29	chr10:23729200-23731000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:23729200-23731000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:23729200-23731600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr10:23729200-23732200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
33	chr10:23729400-23730200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr10:23729400-23730200	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr10:23729400-23730200	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr10:23729400-23730200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
37	chr10:23729400-23730200	Flanking Active TSS	Osteobl	bone
38	chr10:23729400-23730400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:23729400-23730600	Active TSS	Brain Germinal Matrix	brain
40	chr10:23729400-23730800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
41	chr10:23729400-23731000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:23729400-23731000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr10:23729400-23731000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:23729400-23731000	Active TSS	Placenta	Placenta
45	chr10:23729400-23731000	Flanking Active TSS	NHEK	skin
46	chr10:23729400-23731200	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr10:23729400-23731200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr10:23729400-23732000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr10:23729400-23732400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr10:23729600-23730200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links