Variant report

Variant	rs7072045
Chromosome Location	chr10:23735811-23735812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23734822..23737617-chr10:23738406..23741055,2	MCF-7	breast:
2	chr10:23727536..23729786-chr10:23733356..23736222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11013468	0.91[EUR][1000 genomes]
rs11013469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013473	0.91[EUR][1000 genomes]
rs11013475	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013486	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013488	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013501	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013508	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12240690	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12241556	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12246797	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12254124	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258295	1.00[EUR][1000 genomes]
rs12265309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266879	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1511825	1.00[EUR][1000 genomes]
rs1995981	0.91[EUR][1000 genomes]
rs3934842	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748885	0.91[EUR][1000 genomes]
rs59647470	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7080648	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084145	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084695	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094796	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097167	1.00[EUR][1000 genomes]
rs7097185	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905070	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23729800-23736400	Weak transcription	Gastric	stomach
2	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
3	chr10:23729800-23738400	Weak transcription	Lung	lung
4	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
6	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:23731600-23737400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
9	chr10:23731800-23736200	Weak transcription	Thymus	Thymus
10	chr10:23731800-23738400	Weak transcription	Aorta	Aorta
11	chr10:23731800-23738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:23732000-23737600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:23732000-23737800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:23732000-23737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:23732000-23738000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:23732000-23738200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:23732000-23738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:23732000-23740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:23732200-23736000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:23732200-23736400	Weak transcription	HSMM	muscle
23	chr10:23732200-23737400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:23732200-23737400	Weak transcription	Primary T cells from cord blood	blood
25	chr10:23732200-23737600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:23732200-23737800	Weak transcription	Brain Angular Gyrus	brain
27	chr10:23732200-23738400	Weak transcription	Right Atrium	heart
28	chr10:23732200-23739200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:23732200-23747800	Weak transcription	NHEK	skin
30	chr10:23732400-23737400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:23732400-23737400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:23732400-23737600	Weak transcription	GM12878-XiMat	blood
33	chr10:23732400-23737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:23732400-23741200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:23732600-23736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:23732600-23740400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:23732600-23740400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:23732800-23738400	Weak transcription	Spleen	Spleen
40	chr10:23732800-23741000	Weak transcription	Brain Substantia Nigra	brain
41	chr10:23732800-23744000	Weak transcription	Right Ventricle	heart
42	chr10:23733000-23736800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:23733000-23738200	Weak transcription	Ovary	ovary
44	chr10:23733000-23740000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:23733000-23740400	Weak transcription	Fetal Brain Female	brain
46	chr10:23733000-23740600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:23733000-23741000	Weak transcription	Psoas Muscle	Psoas
48	chr10:23733200-23737400	Weak transcription	Fetal Lung	lung
49	chr10:23733200-23738600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:23733400-23737600	Weak transcription	Brain Hippocampus Middle	brain

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