Variant report

Variant	rs12246797
Chromosome Location	chr10:23750840-23750841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23749913..23751537-chr10:23756698..23758599,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11013468	0.91[EUR][1000 genomes]
rs11013469	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013473	0.91[EUR][1000 genomes]
rs11013475	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013486	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013490	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013501	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013508	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12240690	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12241556	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12254101	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12254124	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258295	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265309	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266879	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1511825	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1995981	0.91[EUR][1000 genomes]
rs3934842	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748885	0.91[EUR][1000 genomes]
rs4748887	1.00[CEU][hapmap]
rs59647470	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7072045	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079866	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs7080648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084145	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7097167	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7097185	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905070	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
2	chr10:23746600-23751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:23748600-23754000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23749400-23751000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:23749800-23751200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:23750000-23751400	Enhancers	Fetal Heart	heart
7	chr10:23750200-23751000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:23750200-23751200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:23750200-23751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:23750400-23751000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:23750400-23751200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:23750400-23751200	Enhancers	HepG2	liver
13	chr10:23750600-23751000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:23750600-23751000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:23750600-23751000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:23750600-23751000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:23750600-23751000	Enhancers	Left Ventricle	heart
18	chr10:23750600-23751000	Enhancers	Lung	lung
19	chr10:23750600-23751000	Enhancers	Psoas Muscle	Psoas
20	chr10:23750600-23751000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:23750600-23751000	Enhancers	HSMMtube	muscle
22	chr10:23750800-23751000	Enhancers	Aorta	Aorta
23	chr10:23750800-23751200	Enhancers	Skeletal Muscle Male	skeletal muscle

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