Variant report

Variant	rs7080059
Chromosome Location	chr10:91322201-91322202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12411564	0.94[CHB][hapmap]
rs12412483	1.00[CEU][hapmap]
rs12414975	1.00[CEU][hapmap]
rs12573820	0.89[CHB][hapmap]
rs1998842	1.00[CEU][hapmap]
rs4370841	0.95[ASN][1000 genomes]
rs4934488	1.00[CEU][hapmap]
rs7083585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922914	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91313600-91324600	Weak transcription	Aorta	Aorta
2	chr10:91314600-91324600	Weak transcription	Pancreas	Pancrea
3	chr10:91319400-91323200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:91320800-91323600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:91321200-91323600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:91321400-91322400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr10:91321400-91322600	Enhancers	Fetal Heart	heart
8	chr10:91321400-91323400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:91321400-91323400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:91321400-91323400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:91321400-91323400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:91321400-91323600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:91321400-91323600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:91321600-91323200	Weak transcription	HSMM	muscle
15	chr10:91321800-91323000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:91322000-91322400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr10:91322000-91323400	Weak transcription	Liver	Liver
18	chr10:91322200-91323400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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