Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91315217..91317113-chr10:91460581..91463355,2	K562	blood:
2	chr10:91313371..91315755-chr10:91316862..91319102,2	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12411564	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12414643	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12415606	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572076	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12573641	0.93[ASN][1000 genomes]
rs17122257	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs3740030	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs56034228	1.00[AFR][1000 genomes]
rs56086829	1.00[AFR][1000 genomes]
rs56280029	1.00[AFR][1000 genomes]
rs56306937	1.00[AFR][1000 genomes]
rs56310228	1.00[AFR][1000 genomes]
rs56398433	1.00[AFR][1000 genomes]
rs56908797	1.00[AFR][1000 genomes]
rs57304744	1.00[AFR][1000 genomes]
rs72816713	1.00[AFR][1000 genomes]
rs72816714	1.00[AFR][1000 genomes]
rs72816718	1.00[AFR][1000 genomes]
rs72816720	1.00[AFR][1000 genomes]
rs72816749	1.00[AFR][1000 genomes]
rs72816756	1.00[AFR][1000 genomes]
rs72816757	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72816764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72816768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72818735	1.00[AFR][1000 genomes]
rs73363844	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7897886	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91313600-91324600	Weak transcription	Aorta	Aorta
2	chr10:91314200-91316000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:91314400-91316200	Weak transcription	Osteobl	bone
4	chr10:91314400-91316400	Weak transcription	NHLF	lung
5	chr10:91314400-91319800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:91314600-91316000	Weak transcription	Stomach Mucosa	stomach
7	chr10:91314600-91324600	Weak transcription	Pancreas	Pancrea
8	chr10:91314800-91316200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:91314800-91317200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:91315000-91316000	Weak transcription	A549	lung
11	chr10:91315200-91316200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:91315600-91315800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:91315600-91315800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:91315600-91316600	Enhancers	HSMM	muscle

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