Variant report

Variant	rs56086829
Chromosome Location	chr10:91240137-91240138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12414643	1.00[AFR][1000 genomes]
rs12573820	1.00[AFR][1000 genomes]
rs1331147	0.88[ASN][1000 genomes]
rs17122097	0.88[ASN][1000 genomes]
rs17122257	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17122305	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740030	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56034228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56272844	0.83[EUR][1000 genomes]
rs56280029	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56306937	1.00[AFR][1000 genomes]
rs56310228	1.00[AFR][1000 genomes]
rs56398433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56908797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56962658	0.84[EUR][1000 genomes]
rs57304744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58982954	0.83[EUR][1000 genomes]
rs72816713	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72816714	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72816718	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816720	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72816722	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816723	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72816726	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72816729	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72816736	0.84[EUR][1000 genomes]
rs72816749	1.00[AFR][1000 genomes]
rs72816756	1.00[AFR][1000 genomes]
rs72816757	1.00[AFR][1000 genomes]
rs72816764	1.00[AFR][1000 genomes]
rs72816768	1.00[AFR][1000 genomes]
rs72818735	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91234600-91240400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:91234600-91242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:91234600-91242600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:91235200-91240400	Enhancers	NH-A	brain
5	chr10:91235600-91243400	Enhancers	HSMM	muscle
6	chr10:91237000-91240800	Weak transcription	A549	lung
7	chr10:91237600-91240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:91237600-91240200	Enhancers	Colon Smooth Muscle	Colon
9	chr10:91237600-91241000	Enhancers	Fetal Lung	lung
10	chr10:91237800-91240200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:91237800-91241000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:91237800-91241400	Enhancers	HSMMtube	muscle
13	chr10:91237800-91242000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr10:91237800-91242200	Enhancers	Adipose Nuclei	Adipose
15	chr10:91237800-91242200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:91237800-91242400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:91237800-91242400	Enhancers	NHDF-Ad	bronchial
18	chr10:91237800-91242400	Enhancers	Osteobl	bone
19	chr10:91238000-91240200	Enhancers	Ovary	ovary
20	chr10:91238000-91242400	Enhancers	NHLF	lung
21	chr10:91238200-91240800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:91238200-91240800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:91238400-91242800	Weak transcription	Lung	lung
24	chr10:91238800-91241000	Weak transcription	Hela-S3	cervix
25	chr10:91238800-91242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:91238800-91242400	Enhancers	Liver	Liver
27	chr10:91238800-91250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:91239000-91240800	Weak transcription	NHEK	skin
29	chr10:91239000-91241000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:91239000-91242200	Weak transcription	Left Ventricle	heart
31	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
32	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
33	chr10:91239200-91241000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:91239200-91243000	Weak transcription	Right Atrium	heart
35	chr10:91239400-91240200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:91239400-91240600	Enhancers	Fetal Heart	heart
37	chr10:91239600-91242200	Enhancers	HMEC	breast
38	chr10:91239800-91240200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:91239800-91242200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:91240000-91240400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:91240000-91242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:91240000-91242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:91240000-91242400	Weak transcription	Fetal Intestine Large	intestine
44	chr10:91240000-91242400	Weak transcription	Fetal Intestine Small	intestine

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