Variant report

Variant	rs72816757
Chromosome Location	chr10:91296362-91296363
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12411564	0.92[ASN][1000 genomes]
rs12414643	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12415606	0.98[ASN][1000 genomes]
rs12572076	0.98[ASN][1000 genomes]
rs12573641	0.96[ASN][1000 genomes]
rs12573820	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17122257	1.00[AFR][1000 genomes]
rs3740030	1.00[AFR][1000 genomes]
rs56034228	1.00[AFR][1000 genomes]
rs56086829	1.00[AFR][1000 genomes]
rs56280029	1.00[AFR][1000 genomes]
rs56306937	1.00[AFR][1000 genomes]
rs56310228	1.00[AFR][1000 genomes]
rs56398433	1.00[AFR][1000 genomes]
rs56908797	1.00[AFR][1000 genomes]
rs57304744	1.00[AFR][1000 genomes]
rs72816713	1.00[AFR][1000 genomes]
rs72816714	1.00[AFR][1000 genomes]
rs72816718	1.00[AFR][1000 genomes]
rs72816720	1.00[AFR][1000 genomes]
rs72816749	1.00[AFR][1000 genomes]
rs72816756	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72816764	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72816768	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72818735	1.00[AFR][1000 genomes]
rs73363844	0.98[ASN][1000 genomes]
rs7922914	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91295200-91296400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
2	chr10:91295200-91297000	Weak transcription	Fetal Kidney	kidney
3	chr10:91295800-91297400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:91295800-91300200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:91295800-91300200	Weak transcription	HSMM	muscle
6	chr10:91296000-91296400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:91296000-91296400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
8	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
9	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr10:91296000-91296400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:91296000-91296400	Enhancers	Left Ventricle	heart
13	chr10:91296000-91296600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:91296000-91298600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:91296000-91304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91296200-91296400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:91296200-91296400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr10:91296200-91296400	Enhancers	Placenta	Placenta
19	chr10:91296200-91296400	Flanking Active TSS	Pancreas	Pancrea
20	chr10:91296200-91296600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr10:91296200-91296600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr10:91296200-91296600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr10:91296200-91300200	Weak transcription	Fetal Heart	heart

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