Variant report

Variant	rs12572076
Chromosome Location	chr10:91305277-91305278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12411564	0.90[ASN][1000 genomes]
rs12414643	0.95[ASN][1000 genomes]
rs12415606	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573641	0.98[ASN][1000 genomes]
rs12573820	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60602581	0.94[AFR][1000 genomes]
rs72816757	0.98[ASN][1000 genomes]
rs72816764	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816768	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363844	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922914	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91296400-91307400	Weak transcription	Pancreas	Pancrea
2	chr10:91300400-91308600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:91300800-91307800	Weak transcription	Fetal Heart	heart
4	chr10:91305000-91315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91305200-91307800	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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