Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12411564	0.90[ASN][1000 genomes]
rs12414643	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12415606	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572076	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573641	0.98[ASN][1000 genomes]
rs12573820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17122257	1.00[AFR][1000 genomes]
rs3740030	1.00[AFR][1000 genomes]
rs56034228	1.00[AFR][1000 genomes]
rs56086829	1.00[AFR][1000 genomes]
rs56280029	1.00[AFR][1000 genomes]
rs56306937	1.00[AFR][1000 genomes]
rs56310228	1.00[AFR][1000 genomes]
rs56398433	1.00[AFR][1000 genomes]
rs56908797	1.00[AFR][1000 genomes]
rs57304744	1.00[AFR][1000 genomes]
rs72816713	1.00[AFR][1000 genomes]
rs72816714	1.00[AFR][1000 genomes]
rs72816718	1.00[AFR][1000 genomes]
rs72816720	1.00[AFR][1000 genomes]
rs72816749	1.00[AFR][1000 genomes]
rs72816756	1.00[AFR][1000 genomes]
rs72816757	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72816764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818735	1.00[AFR][1000 genomes]
rs73363844	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922914	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91305000-91315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91307400-91308800	Enhancers	Pancreas	Pancrea
3	chr10:91307600-91309000	Enhancers	Liver	Liver
4	chr10:91307800-91309200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:91307800-91310600	Enhancers	Fetal Heart	heart
6	chr10:91307800-91310800	Enhancers	Stomach Mucosa	stomach
7	chr10:91308200-91309000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:91308400-91309000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:91308600-91309200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:91308600-91310000	Enhancers	HMEC	breast
11	chr10:91308600-91310200	Enhancers	NHEK	skin
12	chr10:91308600-91310400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:91308600-91310600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:91308600-91310600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:91308600-91311000	Enhancers	Hela-S3	cervix

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