Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17122257	0.84[EUR][1000 genomes]
rs17122305	0.84[EUR][1000 genomes]
rs2138042	0.93[ASN][1000 genomes]
rs3740030	0.84[EUR][1000 genomes]
rs56034228	0.91[EUR][1000 genomes]
rs56086829	0.84[EUR][1000 genomes]
rs56272844	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56280029	0.84[EUR][1000 genomes]
rs56398433	0.91[EUR][1000 genomes]
rs56908797	0.88[EUR][1000 genomes]
rs57304744	0.88[EUR][1000 genomes]
rs58982954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816713	0.84[EUR][1000 genomes]
rs72816714	0.84[EUR][1000 genomes]
rs72816718	0.84[EUR][1000 genomes]
rs72816720	0.84[EUR][1000 genomes]
rs72816723	0.88[EUR][1000 genomes]
rs72816726	0.91[EUR][1000 genomes]
rs72816729	0.91[EUR][1000 genomes]
rs72816736	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91263600-91274800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:91273000-91274800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:91273000-91274800	Enhancers	HSMM	muscle
5	chr10:91273200-91275000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:91273400-91274800	Enhancers	HSMMtube	muscle
7	chr10:91273600-91275000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:91273600-91275200	Enhancers	Fetal Heart	heart
9	chr10:91273800-91274800	Enhancers	Pancreas	Pancrea
10	chr10:91274000-91274400	Enhancers	Left Ventricle	heart
11	chr10:91274000-91274600	Enhancers	Right Ventricle	heart
12	chr10:91274000-91274800	Enhancers	NHLF	lung
13	chr10:91274000-91275000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:91274000-91275000	Enhancers	NHDF-Ad	bronchial
15	chr10:91274200-91274400	Enhancers	Right Atrium	heart
16	chr10:91274200-91274800	Enhancers	Osteobl	bone
17	chr10:91274200-91275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:91274200-91275000	Enhancers	NH-A	brain

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