Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17122257	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17122305	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740030	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56034228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56086829	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56272844	0.90[EUR][1000 genomes]
rs56280029	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56398433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56908797	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56962658	0.91[EUR][1000 genomes]
rs57304744	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58982954	0.90[EUR][1000 genomes]
rs72816713	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816714	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816718	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816720	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72816722	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816723	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72816726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816736	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
2	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
3	chr10:91242000-91253800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:91243400-91250400	Weak transcription	HSMM	muscle
5	chr10:91243800-91254000	Weak transcription	Right Atrium	heart
6	chr10:91247000-91250200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:91247000-91250400	Weak transcription	Fetal Heart	heart
8	chr10:91248400-91250200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:91249200-91251200	Enhancers	Fetal Intestine Large	intestine
10	chr10:91249200-91251200	Enhancers	Fetal Intestine Small	intestine
11	chr10:91250000-91251200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:91250000-91251800	Enhancers	HUES48 Cell Line	embryonic stem cell

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