Variant report

Variant	rs72816722
Chromosome Location	chr10:91237657-91237658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91235846..91237981-chr10:91253017..91254786,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17122257	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17122305	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3740030	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56034228	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56086829	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56280029	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56398433	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56908797	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57304744	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72816713	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816714	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816718	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816720	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72816723	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72816726	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816729	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91226800-91237800	Weak transcription	Stomach Mucosa	stomach
2	chr10:91227000-91237800	Weak transcription	Osteobl	bone
3	chr10:91230800-91237800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:91234600-91238800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:91234600-91240400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:91234600-91242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:91234600-91242600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:91235200-91240400	Enhancers	NH-A	brain
9	chr10:91235600-91238800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:91235600-91239200	Enhancers	HMEC	breast
11	chr10:91235600-91239800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:91235600-91243400	Enhancers	HSMM	muscle
13	chr10:91235800-91237800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:91235800-91239000	Enhancers	Left Ventricle	heart
15	chr10:91236000-91238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:91236200-91237800	Weak transcription	Adipose Nuclei	Adipose
17	chr10:91236200-91237800	Weak transcription	Esophagus	oesophagus
18	chr10:91236400-91237800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:91236400-91237800	Weak transcription	NHDF-Ad	bronchial
20	chr10:91236400-91238000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:91236400-91238000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:91236400-91238000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:91236600-91237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:91236600-91237800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:91236600-91238000	Weak transcription	Aorta	Aorta
26	chr10:91236600-91238000	Weak transcription	NHLF	lung
27	chr10:91236600-91238400	Weak transcription	Brain Substantia Nigra	brain
28	chr10:91236800-91237800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:91236800-91237800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:91236800-91237800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:91236800-91237800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:91236800-91237800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:91236800-91237800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:91236800-91237800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:91236800-91237800	Weak transcription	Fetal Intestine Large	intestine
36	chr10:91236800-91237800	Weak transcription	Fetal Intestine Small	intestine
37	chr10:91236800-91237800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:91236800-91237800	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:91236800-91237800	Weak transcription	Placenta	Placenta
40	chr10:91236800-91237800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:91236800-91237800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:91236800-91237800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:91236800-91238000	Weak transcription	Fetal Stomach	stomach
44	chr10:91236800-91238000	Weak transcription	Lung	lung
45	chr10:91236800-91238000	Weak transcription	Ovary	ovary
46	chr10:91236800-91238000	Weak transcription	Psoas Muscle	Psoas
47	chr10:91236800-91238000	Weak transcription	Right Ventricle	heart
48	chr10:91236800-91238600	Weak transcription	Brain Anterior Caudate	brain
49	chr10:91237000-91237800	Enhancers	Fetal Heart	heart
50	chr10:91237000-91237800	Weak transcription	HSMMtube	muscle

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