Variant report

Variant	rs56272844
Chromosome Location	chr10:91277039-91277040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91174356..91176004-chr10:91276224..91278502,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152778	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17122257	0.83[EUR][1000 genomes]
rs17122305	0.83[EUR][1000 genomes]
rs2138042	0.83[ASN][1000 genomes]
rs3740030	0.83[EUR][1000 genomes]
rs56034228	0.90[EUR][1000 genomes]
rs56086829	0.83[EUR][1000 genomes]
rs56280029	0.83[EUR][1000 genomes]
rs56398433	0.90[EUR][1000 genomes]
rs56908797	0.86[EUR][1000 genomes]
rs56962658	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57304744	0.86[EUR][1000 genomes]
rs58982954	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72816713	0.83[EUR][1000 genomes]
rs72816714	0.83[EUR][1000 genomes]
rs72816718	0.83[EUR][1000 genomes]
rs72816720	0.83[EUR][1000 genomes]
rs72816723	0.86[EUR][1000 genomes]
rs72816726	0.90[EUR][1000 genomes]
rs72816729	0.90[EUR][1000 genomes]
rs72816736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91275200-91277800	Weak transcription	Aorta	Aorta
3	chr10:91275600-91278000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:91275600-91279400	Enhancers	HSMM	muscle
5	chr10:91276000-91277800	Weak transcription	Right Ventricle	heart
6	chr10:91276000-91278800	Enhancers	Pancreas	Pancrea
7	chr10:91276000-91281200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:91276200-91277800	Weak transcription	Psoas Muscle	Psoas
9	chr10:91276200-91277800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:91276200-91281000	Weak transcription	Fetal Lung	lung
11	chr10:91276400-91277200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91276400-91277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:91276400-91277800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:91276400-91280200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
16	chr10:91276600-91277600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:91276600-91277600	Weak transcription	HSMMtube	muscle
18	chr10:91276600-91277800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:91276600-91277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:91276600-91277800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:91276600-91277800	Weak transcription	HMEC	breast
22	chr10:91276600-91277800	Weak transcription	NHLF	lung
23	chr10:91276600-91278800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:91276600-91279000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:91276600-91279400	Weak transcription	Fetal Stomach	stomach
26	chr10:91276600-91282000	Weak transcription	Hela-S3	cervix
27	chr10:91276600-91282200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:91276600-91282200	Weak transcription	A549	lung
29	chr10:91276600-91282200	Weak transcription	NHEK	skin
30	chr10:91276600-91282600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:91276600-91283000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:91276600-91284400	Enhancers	Fetal Heart	heart
33	chr10:91276800-91277800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:91276800-91277800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:91276800-91277800	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:91276800-91277800	Weak transcription	NHDF-Ad	bronchial
37	chr10:91276800-91278000	Weak transcription	NH-A	brain
38	chr10:91276800-91278200	Enhancers	Right Atrium	heart
39	chr10:91276800-91278600	Enhancers	Left Ventricle	heart
40	chr10:91276800-91280200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:91277000-91277400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:91277000-91277400	Weak transcription	Osteobl	bone

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