Variant report

Variant	rs72816736
Chromosome Location	chr10:91277936-91277937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91174356..91176004-chr10:91276224..91278502,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152778	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17122257	0.84[EUR][1000 genomes]
rs17122305	0.84[EUR][1000 genomes]
rs2138042	0.83[ASN][1000 genomes]
rs3740030	0.84[EUR][1000 genomes]
rs56034228	0.91[EUR][1000 genomes]
rs56086829	0.84[EUR][1000 genomes]
rs56272844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280029	0.84[EUR][1000 genomes]
rs56398433	0.91[EUR][1000 genomes]
rs56908797	0.88[EUR][1000 genomes]
rs56962658	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57304744	0.88[EUR][1000 genomes]
rs58982954	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72816713	0.84[EUR][1000 genomes]
rs72816714	0.84[EUR][1000 genomes]
rs72816718	0.84[EUR][1000 genomes]
rs72816720	0.84[EUR][1000 genomes]
rs72816723	0.88[EUR][1000 genomes]
rs72816726	0.91[EUR][1000 genomes]
rs72816729	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91275600-91278000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:91275600-91279400	Enhancers	HSMM	muscle
3	chr10:91276000-91278800	Enhancers	Pancreas	Pancrea
4	chr10:91276000-91281200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:91276200-91281000	Weak transcription	Fetal Lung	lung
6	chr10:91276400-91280200	Weak transcription	Fetal Intestine Small	intestine
7	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:91276600-91278800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:91276600-91279000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91276600-91279400	Weak transcription	Fetal Stomach	stomach
11	chr10:91276600-91282000	Weak transcription	Hela-S3	cervix
12	chr10:91276600-91282200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:91276600-91282200	Weak transcription	A549	lung
14	chr10:91276600-91282200	Weak transcription	NHEK	skin
15	chr10:91276600-91282600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:91276600-91283000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:91276600-91284400	Enhancers	Fetal Heart	heart
18	chr10:91276800-91278000	Weak transcription	NH-A	brain
19	chr10:91276800-91278200	Enhancers	Right Atrium	heart
20	chr10:91276800-91278600	Enhancers	Left Ventricle	heart
21	chr10:91276800-91280200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:91277400-91280000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:91277400-91280200	Enhancers	Osteobl	bone
24	chr10:91277400-91281800	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:91277600-91279200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:91277600-91279400	Enhancers	HSMMtube	muscle
27	chr10:91277600-91279600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:91277800-91278200	Enhancers	Aorta	Aorta
29	chr10:91277800-91278200	Enhancers	Colon Smooth Muscle	Colon
30	chr10:91277800-91278200	Enhancers	Lung	lung
31	chr10:91277800-91278200	Enhancers	Psoas Muscle	Psoas
32	chr10:91277800-91278200	Enhancers	Right Ventricle	heart
33	chr10:91277800-91278200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:91277800-91278200	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:91277800-91278200	Enhancers	HMEC	breast
36	chr10:91277800-91278400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:91277800-91278400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:91277800-91278400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:91277800-91278600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr10:91277800-91279400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:91277800-91279400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:91277800-91279600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:91277800-91279600	Enhancers	NHLF	lung
44	chr10:91277800-91282400	Enhancers	NHDF-Ad	bronchial

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