Variant report

Variant	rs7081076
Chromosome Location	chr10:97174537-97174538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11818044	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327559	0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17110738	1.00[ASW][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2281939	0.90[JPT][hapmap]
rs7084649	0.90[JPT][hapmap]
rs7907756	0.95[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
3	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
4	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
5	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:97165400-97177200	Strong transcription	HepG2	liver
8	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
9	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:97168600-97175200	Weak transcription	HSMMtube	muscle
11	chr10:97169000-97177000	Strong transcription	Liver	Liver
12	chr10:97169200-97180400	Weak transcription	Ovary	ovary
13	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
15	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:97170400-97175200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:97170600-97175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:97170600-97175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:97171000-97175200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:97171000-97179200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:97171600-97175200	Active TSS	Left Ventricle	heart
25	chr10:97172200-97174600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:97172200-97174800	Enhancers	Brain Angular Gyrus	brain
27	chr10:97172400-97176000	Strong transcription	Placenta	Placenta
28	chr10:97172400-97176600	Genic enhancers	Colon Smooth Muscle	Colon
29	chr10:97172400-97177000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:97172800-97174600	Weak transcription	Fetal Brain Female	brain
31	chr10:97173000-97175400	Strong transcription	Fetal Stomach	stomach
32	chr10:97173200-97175400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:97173400-97174600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr10:97173400-97175400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:97173400-97177000	Strong transcription	Fetal Intestine Small	intestine
36	chr10:97173600-97175800	Strong transcription	Gastric	stomach
37	chr10:97173600-97176000	Genic enhancers	Aorta	Aorta
38	chr10:97173600-97185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:97173800-97174600	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr10:97173800-97174600	Enhancers	Pancreas	Pancrea
41	chr10:97173800-97174600	Flanking Active TSS	Right Atrium	heart
42	chr10:97173800-97174600	Flanking Active TSS	Right Ventricle	heart
43	chr10:97173800-97174600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr10:97173800-97174800	Enhancers	Brain Hippocampus Middle	brain
45	chr10:97173800-97174800	Enhancers	Brain Substantia Nigra	brain
46	chr10:97173800-97175000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr10:97173800-97175800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:97173800-97175800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:97173800-97175800	Strong transcription	Fetal Intestine Large	intestine
50	chr10:97173800-97175800	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links