Variant report

Variant	rs17110738
Chromosome Location	chr10:97177754-97177755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1002788	1.00[MEX][hapmap]
rs10509693	1.00[MEX][hapmap]
rs11188299	1.00[MEX][hapmap]
rs11818044	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327559	0.81[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17110617	1.00[MEX][hapmap]
rs17110635	1.00[MEX][hapmap]
rs17110667	1.00[MEX][hapmap]
rs4145905	1.00[MEX][hapmap]
rs7081076	1.00[ASW][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907756	0.83[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
3	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
4	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
5	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
8	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:97169200-97180400	Weak transcription	Ovary	ovary
10	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
12	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97171000-97179200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:97173600-97185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:97174600-97183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:97175000-97189800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:97175400-97179400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:97175800-97180200	Weak transcription	Fetal Intestine Large	intestine
22	chr10:97175800-97180200	Weak transcription	Gastric	stomach
23	chr10:97175800-97180400	Genic enhancers	Stomach Smooth Muscle	stomach
24	chr10:97175800-97183200	Weak transcription	Pancreas	Pancrea
25	chr10:97175800-97187200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
27	chr10:97176000-97178600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:97176000-97178800	Weak transcription	Placenta	Placenta
29	chr10:97176000-97179200	Weak transcription	HSMMtube	muscle
30	chr10:97176000-97180400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:97176000-97180400	Weak transcription	Lung	lung
32	chr10:97176000-97181000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:97176000-97189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:97176200-97181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:97176400-97178400	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:97176400-97180400	Weak transcription	Brain Substantia Nigra	brain
40	chr10:97176400-97181600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97176600-97178400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:97176600-97179000	Weak transcription	Brain Angular Gyrus	brain
43	chr10:97176600-97180400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:97176600-97180800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:97176800-97178800	Enhancers	Colon Smooth Muscle	Colon
46	chr10:97176800-97180000	Weak transcription	Brain Germinal Matrix	brain
47	chr10:97177000-97178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:97177000-97178400	Weak transcription	Liver	Liver
49	chr10:97177000-97178600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:97177000-97178800	Weak transcription	Brain Hippocampus Middle	brain

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