Variant report

Variant	rs17110667
Chromosome Location	chr10:97119509-97119510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97110313..97112983-chr10:97116773..97120494,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002788	1.00[ASW][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10509693	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs11188299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs11815355	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11818044	1.00[CHB][hapmap]
rs12250022	0.90[EUR][1000 genomes]
rs1327559	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17110617	0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17110635	1.00[ASW][hapmap];0.85[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17110738	1.00[MEX][hapmap]
rs17849149	0.90[EUR][1000 genomes]
rs2182754	0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs4145905	0.85[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs56864056	0.90[EUR][1000 genomes]
rs57349558	0.90[EUR][1000 genomes]
rs57726112	0.90[EUR][1000 genomes]
rs60844364	0.90[EUR][1000 genomes]
rs61739184	0.85[ASN][1000 genomes]
rs7084268	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7915060	0.86[CHB][hapmap]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
7	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:97114400-97119600	Weak transcription	GM12878-XiMat	blood
12	chr10:97114800-97120800	Genic enhancers	Stomach Smooth Muscle	stomach
13	chr10:97115400-97120000	Weak transcription	HUVEC	blood vessel
14	chr10:97115600-97119600	Strong transcription	Left Ventricle	heart
15	chr10:97115800-97120000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
17	chr10:97116000-97119600	Strong transcription	Lung	lung
18	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
19	chr10:97116000-97138200	Weak transcription	Ovary	ovary
20	chr10:97116400-97120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:97116400-97121600	Weak transcription	Right Atrium	heart
22	chr10:97116400-97121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:97116400-97123000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:97116600-97120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:97116600-97120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:97116600-97120200	Weak transcription	Esophagus	oesophagus
30	chr10:97116600-97120600	Strong transcription	Adipose Nuclei	Adipose
31	chr10:97116600-97120800	Weak transcription	Spleen	Spleen
32	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:97116800-97120200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:97116800-97121600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:97116800-97122800	Weak transcription	Fetal Intestine Large	intestine
38	chr10:97116800-97123000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
41	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
43	chr10:97117000-97119600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:97117000-97120000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:97117000-97122800	Weak transcription	Fetal Heart	heart
46	chr10:97117000-97123000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:97117200-97119800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:97117200-97122400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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