Variant report

Variant	rs17849149
Chromosome Location	chr10:97073830-97073831
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97073155..97074833-chr10:97074893..97076970,2	MCF-7	breast:
3	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
4	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
5	chr10:97049954..97053726-chr10:97073824..97076518,4	MCF-7	breast:
6	chr10:97072681..97075198-chr10:97078995..97080979,2	MCF-7	breast:
7	chr10:97048574..97053908-chr10:97072815..97077424,5	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1002788	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110635	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110667	0.90[EUR][1000 genomes]
rs2182754	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56864056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97069000-97075600	Enhancers	K562	blood
3	chr10:97069200-97087000	Weak transcription	HSMM	muscle
4	chr10:97069400-97074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97069800-97075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:97070200-97074000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:97070200-97074200	Enhancers	Fetal Heart	heart
8	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
9	chr10:97070800-97074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
11	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:97071000-97074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:97071000-97074000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:97071000-97074000	Weak transcription	Spleen	Spleen
15	chr10:97071000-97075200	Weak transcription	Gastric	stomach
16	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
19	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
20	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
21	chr10:97071600-97074000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
23	chr10:97072200-97074000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:97072200-97074600	Strong transcription	Placenta	Placenta
25	chr10:97072200-97075400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:97072400-97075400	Strong transcription	Fetal Brain Female	brain
27	chr10:97072400-97075800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:97072400-97078400	Weak transcription	Fetal Lung	lung
29	chr10:97072600-97074600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:97072600-97074800	Strong transcription	Liver	Liver
31	chr10:97072600-97075200	Enhancers	Psoas Muscle	Psoas
32	chr10:97072600-97075600	Strong transcription	Brain Anterior Caudate	brain
33	chr10:97072600-97075600	Genic enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:97072600-97075600	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr10:97072600-97076000	Genic enhancers	Colon Smooth Muscle	Colon
36	chr10:97072600-97077200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:97072600-97077200	Genic enhancers	Rectal Smooth Muscle	rectum
38	chr10:97072800-97074200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97072800-97074600	Genic enhancers	Aorta	Aorta
40	chr10:97072800-97074600	Enhancers	Right Atrium	heart
41	chr10:97072800-97075400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:97072800-97076400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97072800-97078200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:97073000-97074600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:97073000-97075000	Strong transcription	Fetal Intestine Large	intestine
46	chr10:97073000-97075200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:97073000-97075400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:97073000-97076800	Genic enhancers	Left Ventricle	heart
49	chr10:97073000-97077600	Strong transcription	Fetal Stomach	stomach
50	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum

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