Variant report

Variant	rs4145905
Chromosome Location	chr10:97073479-97073480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97073155..97074833-chr10:97074893..97076970,2	MCF-7	breast:
3	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
4	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
5	chr10:97072681..97075198-chr10:97078995..97080979,2	MCF-7	breast:
6	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:
7	chr10:97048574..97053908-chr10:97072815..97077424,5	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002788	0.85[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509693	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs11188299	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs11815355	0.82[CHB][hapmap]
rs11818044	1.00[CHB][hapmap]
rs12250022	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327559	0.85[CHB][hapmap]
rs17110617	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110635	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110667	0.85[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17110738	1.00[MEX][hapmap]
rs17849149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56864056	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349558	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726112	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844364	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084268	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
3	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:97068600-97073800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:97069000-97073600	Weak transcription	HepG2	liver
6	chr10:97069000-97075600	Enhancers	K562	blood
7	chr10:97069200-97087000	Weak transcription	HSMM	muscle
8	chr10:97069400-97074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:97069600-97073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:97069800-97075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:97070200-97074000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:97070200-97074200	Enhancers	Fetal Heart	heart
13	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
14	chr10:97070800-97074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
16	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:97071000-97073600	Weak transcription	Lung	lung
18	chr10:97071000-97073600	Weak transcription	Right Ventricle	heart
19	chr10:97071000-97074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97071000-97074000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97071000-97074000	Weak transcription	Spleen	Spleen
22	chr10:97071000-97075200	Weak transcription	Gastric	stomach
23	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
26	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
27	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
28	chr10:97071600-97073600	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97071600-97074000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
31	chr10:97072200-97073600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr10:97072200-97074000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr10:97072200-97074600	Strong transcription	Placenta	Placenta
34	chr10:97072200-97075400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:97072400-97073600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:97072400-97073800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:97072400-97075400	Strong transcription	Fetal Brain Female	brain
38	chr10:97072400-97075800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:97072400-97078400	Weak transcription	Fetal Lung	lung
40	chr10:97072600-97073800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr10:97072600-97074600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:97072600-97074800	Strong transcription	Liver	Liver
43	chr10:97072600-97075200	Enhancers	Psoas Muscle	Psoas
44	chr10:97072600-97075600	Strong transcription	Brain Anterior Caudate	brain
45	chr10:97072600-97075600	Genic enhancers	Duodenum Smooth Muscle	Duodenum
46	chr10:97072600-97075600	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr10:97072600-97076000	Genic enhancers	Colon Smooth Muscle	Colon
48	chr10:97072600-97077200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97072600-97077200	Genic enhancers	Rectal Smooth Muscle	rectum
50	chr10:97072800-97074200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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