Variant report

Variant	rs1327559
Chromosome Location	chr10:97168140-97168141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97161181..97166322-chr10:97166660..97170109,5	K562	blood:
2	chr10:97167985..97169534-chr10:97171179..97173554,2	K562	blood:
3	chr10:97161181..97164429-chr10:97166660..97169503,3	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509693	1.00[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188299	0.91[ASW][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs11815355	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11818044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17110635	0.85[CHB][hapmap]
rs17110667	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17110738	0.81[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2182754	0.82[CHB][hapmap]
rs4145905	0.85[CHB][hapmap]
rs61739184	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7081076	0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7084268	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7907756	0.87[CHD][hapmap];0.81[GIH][hapmap]
rs7915060	0.86[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:97155400-97170800	Enhancers	Right Atrium	heart
5	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
7	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
10	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
11	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:97162800-97171000	Strong transcription	Placenta	Placenta
14	chr10:97162800-97171200	Strong transcription	Fetal Intestine Large	intestine
15	chr10:97163000-97169400	Genic enhancers	Left Ventricle	heart
16	chr10:97164000-97168200	Genic enhancers	Aorta	Aorta
17	chr10:97164000-97168600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:97164400-97168200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:97164400-97168200	Enhancers	Psoas Muscle	Psoas
20	chr10:97164800-97168400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:97165400-97177200	Strong transcription	HepG2	liver
22	chr10:97165800-97169200	Genic enhancers	Fetal Muscle Leg	muscle
23	chr10:97166000-97168400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97166000-97169600	Genic enhancers	Fetal Stomach	stomach
25	chr10:97166000-97169800	Enhancers	Stomach Mucosa	stomach
26	chr10:97166000-97170000	Enhancers	Brain Angular Gyrus	brain
27	chr10:97166200-97168800	Enhancers	Hela-S3	cervix
28	chr10:97166200-97170200	Enhancers	Brain Anterior Caudate	brain
29	chr10:97166400-97168200	Enhancers	Brain Substantia Nigra	brain
30	chr10:97166400-97168200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr10:97166400-97169800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
33	chr10:97166600-97169400	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:97166600-97170000	Enhancers	Fetal Heart	heart
35	chr10:97166600-97171800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:97166800-97168200	Enhancers	Lung	lung
37	chr10:97166800-97168800	Enhancers	Right Ventricle	heart
38	chr10:97166800-97170000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:97167000-97168200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:97167000-97168400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:97167000-97173600	Weak transcription	Gastric	stomach
42	chr10:97167000-97173800	Weak transcription	Brain Germinal Matrix	brain
43	chr10:97167200-97168400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:97167200-97168400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:97167200-97168400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:97167200-97168600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:97167200-97168800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:97167200-97168800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:97167200-97169000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:97167200-97169800	Genic enhancers	Colon Smooth Muscle	Colon

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