Variant report

Variant	rs10509693
Chromosome Location	chr10:97145229-97145230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:97145217-97145267	AG10803	skin:	n/a
2	chr10:97145217-97145267	GM12878	blood:	n/a
3	chr10:97145217-97145267	Caco-2	colon:	n/a
4	chr10:97145217-97145267	HEK293	kidney:	embryo
5	chr10:97145217-97145267	HCF	heart:	n/a
6	chr10:97145217-97145267	HL-60	blood:	n/a
7	chr10:97145217-97145267	A549	lung:	n/a
8	chr10:97145217-97145267	NB4	blood:	n/a
9	chr10:97145217-97145267	HIPEpiC	eye:	n/a
10	chr10:97145217-97145267	AoSMC	blood vessel:	n/a
11	chr10:97145217-97145267	Hela-S3	cervix:	n/a
12	chr10:97145217-97145267	HPAEpiC	pulmonary alveolar:	n/a
13	chr10:97145217-97145267	BJ	skin:	n/a
14	chr10:97145217-97145267	LNCaP	prostate:	n/a
15	chr10:97145217-97145267	K562	blood:	n/a
16	chr10:97145217-97145267	HCM	heart:	n/a
17	chr10:97145217-97145267	ovcar-3	ovarian:	n/a
18	chr10:97145217-97145267	AG04450	lung:	fetal
19	chr10:97145217-97145267	T-47D	breast:	n/a
20	chr10:97145217-97145267	HepG2	liver:	n/a
21	chr10:97145217-97145267	Hepatocyte	liver:	n/a
22	chr10:97145217-97145267	SK-N-MC	brain:	n/a
23	chr10:97145217-97145267	HCT-116	colon:	n/a
24	chr10:97145217-97145267	ProgFib	skin:	n/a
25	chr10:97145217-97145267	GM06990	blood:	n/a
26	chr10:97145217-97145267	SK-N-SH	brain:	n/a
27	chr10:97145217-97145267	HUVEC	blood vessel:	n/a
28	chr10:97145217-97145267	Jurkat	blood:	n/a
29	chr10:97145217-97145267	HEEpiC	esophagus:	n/a
30	chr10:97145217-97145267	CMK	blood:	n/a
31	chr10:97145217-97145267	RPTEC	kidney:	n/a
32	chr10:97145217-97145267	NH-A	brain:	n/a
33	chr10:97145217-97145267	IMR90	lung:	fetal
34	chr10:97145217-97145267	HRCEpiC	kidney:	n/a
35	chr10:97145217-97145267	PANC-1	pancreas:	n/a
36	chr10:97145217-97145267	H1-hESC	embryonic stem cell:	embryo
37	chr10:97145217-97145267	AG04449	skin:	fetal
38	chr10:97145217-97145267	HAEpiC	amniotic membrane:	n/a
39	chr10:97145217-97145267	NT2-D1	testis:	n/a
40	chr10:97145217-97145267	SAEC	small airway:	n/a
41	chr10:97145217-97145267	BE2_C	brain:	n/a
42	chr10:97145217-97145267	NHDF-neo	bronchial:	n/a
43	chr10:97145217-97145267	GM12891	blood:	n/a
44	chr10:97145217-97145267	AG09309	skin:	n/a
45	chr10:97145217-97145267	U87	brain:	n/a
46	chr10:97145217-97145267	MCF-7	breast:	n/a
47	chr10:97145217-97145267	MCF10A-Er-Src	breast:	n/a
48	chr10:97145217-97145267	SKMC	muscle:	n/a
49	chr10:97145217-97145267	GM19239	blood:	n/a
50	chr10:97145217-97145267	HCPEpiC	choroid plexus:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97140678..97143224-chr10:97145015..97146938,2	K562	blood:

No data

Variant related genes	Relation type
SORBS1	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1002788	1.00[MEX][hapmap]
rs11188299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11815355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11818044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1327559	1.00[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17110617	1.00[MEX][hapmap]
rs17110635	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs17110667	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs17110738	1.00[MEX][hapmap]
rs2182754	0.82[CHB][hapmap]
rs4145905	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs61739184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915060	0.86[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
4	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
5	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
8	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
11	chr10:97137800-97147400	Strong transcription	HepG2	liver
12	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:97138400-97145800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
17	chr10:97138600-97145400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:97139200-97145600	Strong transcription	Liver	Liver
19	chr10:97139400-97145400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
21	chr10:97140600-97158600	Weak transcription	HSMM	muscle
22	chr10:97140800-97147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:97140800-97147200	Weak transcription	Brain Angular Gyrus	brain
24	chr10:97140800-97148000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
26	chr10:97141000-97147800	Weak transcription	Fetal Brain Male	brain
27	chr10:97142200-97146200	Weak transcription	Pancreas	Pancrea
28	chr10:97142200-97147400	Weak transcription	Gastric	stomach
29	chr10:97142200-97147400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:97142400-97146400	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:97142400-97147600	Weak transcription	Brain Substantia Nigra	brain
34	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
37	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:97143200-97147200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:97143400-97145600	Strong transcription	Right Ventricle	heart
40	chr10:97143400-97147400	Weak transcription	Brain Anterior Caudate	brain
41	chr10:97143600-97147000	Genic enhancers	Adipose Nuclei	Adipose
42	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
43	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
47	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97144200-97149400	Weak transcription	HSMMtube	muscle
49	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:97144400-97146000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links