Variant report

Variant	rs2182754
Chromosome Location	chr10:97082282-97082283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97079430..97082419-chr10:97082702..97084637,2	MCF-7	breast:
2	chr10:97080779..97082633-chr10:97084694..97086898,2	K562	blood:
3	chr10:97080532..97082399-chr10:97094368..97096857,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1002788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509693	0.82[CHB][hapmap]
rs11188299	0.82[CHB][hapmap]
rs11815355	0.82[CHB][hapmap]
rs11818044	1.00[CHB][hapmap]
rs12250022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327559	0.82[CHB][hapmap]
rs17110617	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110667	0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs17849149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56864056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084268	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
13	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
18	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
20	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
21	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
24	chr10:97075200-97098800	Weak transcription	Ovary	ovary
25	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:97076200-97082600	Weak transcription	Fetal Heart	heart
28	chr10:97076400-97082600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:97077200-97084400	Strong transcription	Fetal Brain Female	brain
30	chr10:97079000-97085000	Strong transcription	Brain Germinal Matrix	brain
31	chr10:97079200-97085200	Strong transcription	Placenta	Placenta
32	chr10:97079400-97085000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:97079400-97085000	Strong transcription	Fetal Stomach	stomach
34	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
35	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:97079600-97083800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97079600-97084400	Strong transcription	Liver	Liver
38	chr10:97079600-97084600	Strong transcription	Fetal Intestine Small	intestine
39	chr10:97079800-97083800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:97080000-97083200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:97080000-97083200	Strong transcription	Left Ventricle	heart
42	chr10:97080000-97084000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
45	chr10:97080400-97083200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:97080400-97083600	Strong transcription	Brain Cingulate Gyrus	brain
47	chr10:97080400-97085000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:97080600-97083000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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