Variant report

Variant	rs56864056
Chromosome Location	chr10:97079918-97079919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97079430..97082419-chr10:97082702..97084637,2	MCF-7	breast:
2	chr10:97072681..97075198-chr10:97078995..97080979,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1002788	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110635	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110667	0.90[EUR][1000 genomes]
rs17849149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145905	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844364	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
13	chr10:97073200-97080400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97073400-97081000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:97073600-97080800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:97074000-97080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:97074000-97080600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97074400-97080400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:97074400-97080800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
25	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
27	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
28	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:97074800-97080600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:97075000-97080400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:97075200-97080600	Weak transcription	HepG2	liver
33	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
34	chr10:97075200-97098800	Weak transcription	Ovary	ovary
35	chr10:97075600-97080000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:97075600-97080600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97075600-97081400	Weak transcription	Gastric	stomach
38	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
39	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:97076000-97082000	Strong transcription	Colon Smooth Muscle	Colon
41	chr10:97076200-97082600	Weak transcription	Fetal Heart	heart
42	chr10:97076400-97082600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97077200-97080400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:97077200-97084400	Strong transcription	Fetal Brain Female	brain
45	chr10:97077400-97080400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:97077400-97081400	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:97077600-97080600	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97078600-97080000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:97079000-97080000	Enhancers	Fetal Lung	lung
50	chr10:97079000-97080200	Enhancers	HSMMtube	muscle

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