Variant report

Variant	rs1002788
Chromosome Location	chr10:97085131-97085132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97065717..97068641-chr10:97084315..97087112,2	K562	blood:
2	chr10:97083241..97086137-chr10:97105978..97107656,2	K562	blood:
3	chr10:97067141..97070104-chr10:97084315..97087296,2	K562	blood:
4	chr10:97083801..97085402-chr10:97087063..97088908,2	K562	blood:
5	chr10:97080779..97082633-chr10:97084694..97086898,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509693	1.00[MEX][hapmap]
rs11188299	1.00[MEX][hapmap]
rs11815355	0.82[CHB][hapmap]
rs11818044	1.00[CHB][hapmap]
rs12250022	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110617	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110635	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110667	1.00[ASW][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17110738	1.00[MEX][hapmap]
rs17849149	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145905	0.85[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56864056	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349558	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726112	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844364	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
12	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
16	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
18	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
21	chr10:97075200-97098800	Weak transcription	Ovary	ovary
22	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
23	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:97079200-97085200	Strong transcription	Placenta	Placenta
25	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
26	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
29	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:97081200-97087000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:97081800-97086000	Weak transcription	Gastric	stomach
33	chr10:97081800-97087200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:97081800-97087200	Weak transcription	HSMMtube	muscle
35	chr10:97081800-97087400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97081800-97088800	Weak transcription	Brain Angular Gyrus	brain
37	chr10:97081800-97089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:97081800-97091000	Weak transcription	Fetal Intestine Large	intestine
39	chr10:97081800-97092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:97082000-97087000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:97082600-97086200	Enhancers	Fetal Heart	heart
42	chr10:97083000-97086800	Weak transcription	HepG2	liver
43	chr10:97083000-97087000	Weak transcription	Lung	lung
44	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:97083200-97087400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:97083200-97088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:97083400-97086000	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97083400-97087000	Weak transcription	Right Ventricle	heart
49	chr10:97083400-97087200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:97083400-97089200	Weak transcription	GM12878-XiMat	blood

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