Variant report

Variant	rs11188299
Chromosome Location	chr10:97132793-97132794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97131433..97134103-chr10:97153570..97155875,2	K562	blood:
2	chr10:97132552..97135428-chr10:97138825..97140686,2	K562	blood:
3	chr10:97126867..97129564-chr10:97130715..97133324,2	K562	blood:
4	chr10:97132603..97134648-chr10:97154375..97156702,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1002788	1.00[MEX][hapmap]
rs10509693	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11815355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1327559	0.91[ASW][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs17110617	1.00[MEX][hapmap]
rs17110635	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs17110667	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs17110738	1.00[MEX][hapmap]
rs2182754	0.82[CHB][hapmap]
rs4145905	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs61739184	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7084268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915060	0.86[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
3	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97116000-97138200	Weak transcription	Ovary	ovary
7	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
11	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
13	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
14	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
16	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
17	chr10:97120400-97141400	Weak transcription	Gastric	stomach
18	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
19	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
21	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:97124600-97135200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97124600-97135200	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:97124800-97134600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:97125000-97133000	Strong transcription	Placenta	Placenta
27	chr10:97125000-97133600	Strong transcription	Liver	Liver
28	chr10:97125200-97134200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:97126200-97139400	Weak transcription	Lung	lung
30	chr10:97126800-97137800	Weak transcription	HepG2	liver
31	chr10:97129000-97135400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:97129200-97133000	Strong transcription	Adipose Nuclei	Adipose
33	chr10:97129400-97137800	Weak transcription	Right Atrium	heart
34	chr10:97129600-97135000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:97129600-97136400	Strong transcription	Left Ventricle	heart
36	chr10:97130000-97138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
38	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:97130400-97133800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:97130600-97134200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97130800-97132800	Strong transcription	Colon Smooth Muscle	Colon
42	chr10:97130800-97134000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:97130800-97137800	Weak transcription	Fetal Stomach	stomach
44	chr10:97131000-97135200	Weak transcription	Aorta	Aorta
45	chr10:97131200-97133200	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:97131200-97134600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:97131200-97135200	Weak transcription	Right Ventricle	heart
48	chr10:97131200-97140200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:97131200-97140200	Weak transcription	HSMM	muscle
50	chr10:97131400-97135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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