Variant report

Variant	rs11815355
Chromosome Location	chr10:97166330-97166331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1002788	0.82[CHB][hapmap]
rs10509693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1327559	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17110635	0.82[CHB][hapmap]
rs17110667	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2182754	0.82[CHB][hapmap]
rs4145905	0.82[CHB][hapmap]
rs61739184	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7084268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915060	0.85[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97155400-97168000	Strong transcription	Fetal Intestine Small	intestine
6	chr10:97155400-97170800	Enhancers	Right Atrium	heart
7	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
9	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
12	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
13	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:97158800-97166400	Weak transcription	Brain Substantia Nigra	brain
15	chr10:97159000-97166400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97159000-97166800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:97159000-97167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97159000-97168000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:97159000-97168000	Weak transcription	HSMM	muscle
20	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:97159800-97167800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97160400-97166600	Weak transcription	Fetal Brain Male	brain
23	chr10:97161800-97167800	Genic enhancers	Stomach Smooth Muscle	stomach
24	chr10:97162000-97168000	Weak transcription	Ovary	ovary
25	chr10:97162200-97166400	Weak transcription	HMEC	breast
26	chr10:97162800-97171000	Strong transcription	Placenta	Placenta
27	chr10:97162800-97171200	Strong transcription	Fetal Intestine Large	intestine
28	chr10:97163000-97169400	Genic enhancers	Left Ventricle	heart
29	chr10:97163800-97166800	Genic enhancers	Colon Smooth Muscle	Colon
30	chr10:97164000-97166600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:97164000-97167000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:97164000-97168200	Genic enhancers	Aorta	Aorta
33	chr10:97164000-97168600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:97164200-97168000	Genic enhancers	Adipose Nuclei	Adipose
35	chr10:97164400-97168200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr10:97164400-97168200	Enhancers	Psoas Muscle	Psoas
37	chr10:97164600-97166400	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:97164600-97166400	Genic enhancers	Right Ventricle	heart
39	chr10:97164600-97166400	Strong transcription	HSMMtube	muscle
40	chr10:97164600-97166800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
41	chr10:97164800-97166400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:97164800-97166600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:97164800-97168400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97165000-97166400	Weak transcription	K562	blood
45	chr10:97165000-97166600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:97165000-97166800	Weak transcription	Lung	lung
47	chr10:97165000-97168000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:97165200-97166400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:97165400-97166400	Genic enhancers	Rectal Smooth Muscle	rectum
50	chr10:97165400-97166600	Strong transcription	Fetal Brain Female	brain

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