Variant report

Variant	rs7084606
Chromosome Location	chr10:97335852-97335853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10882623	1.00[EUR][1000 genomes]
rs10882624	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882626	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882627	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882628	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882629	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882630	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882631	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882632	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882633	0.97[EUR][1000 genomes]
rs10882634	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882635	0.97[EUR][1000 genomes]
rs11188366	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188368	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188369	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188370	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188371	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188376	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11541780	0.92[EUR][1000 genomes]
rs12218873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242866	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242918	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242923	1.00[EUR][1000 genomes]
rs12248661	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250514	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176892	0.87[EUR][1000 genomes]
rs3176893	0.87[EUR][1000 genomes]
rs35168849	0.87[EUR][1000 genomes]
rs41291572	0.87[EUR][1000 genomes]
rs62625035	0.87[EUR][1000 genomes]
rs7073436	0.83[EUR][1000 genomes]
rs7086374	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7097236	0.87[EUR][1000 genomes]
rs7099430	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099515	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101227	0.87[EUR][1000 genomes]
rs73325155	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73325195	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150947	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150950	0.82[AFR][1000 genomes]
rs7896068	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903143	0.97[EUR][1000 genomes]
rs7919673	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7084606	TCTN3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97333200-97336000	Enhancers	Fetal Heart	heart
2	chr10:97334800-97338400	Weak transcription	HSMMtube	muscle
3	chr10:97334800-97339400	Weak transcription	Right Atrium	heart
4	chr10:97334800-97339600	Weak transcription	Left Ventricle	heart
5	chr10:97335000-97339000	Weak transcription	Aorta	Aorta
6	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
7	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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