Variant report

Variant	rs7101227
Chromosome Location	chr10:97472865-97472866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10882622	1.00[CEU][hapmap]
rs10882623	0.87[EUR][1000 genomes]
rs10882624	0.87[EUR][1000 genomes]
rs10882626	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10882627	0.87[EUR][1000 genomes]
rs10882628	0.87[EUR][1000 genomes]
rs10882629	0.87[EUR][1000 genomes]
rs10882630	0.87[EUR][1000 genomes]
rs10882631	0.87[EUR][1000 genomes]
rs10882632	0.87[EUR][1000 genomes]
rs10882633	0.85[EUR][1000 genomes]
rs10882634	0.87[EUR][1000 genomes]
rs10882635	0.85[EUR][1000 genomes]
rs11188366	0.87[EUR][1000 genomes]
rs11188368	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11188369	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11188370	0.87[EUR][1000 genomes]
rs11188371	0.87[EUR][1000 genomes]
rs11188376	0.87[EUR][1000 genomes]
rs11541780	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11542152	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12218873	0.87[EUR][1000 genomes]
rs12242866	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12242918	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12242923	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12248661	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12250514	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12255572	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3176887	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3176892	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176893	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181116	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181118	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181125	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181127	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35168849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62625035	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073436	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084606	0.87[EUR][1000 genomes]
rs7086374	0.82[EUR][1000 genomes]
rs7097236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099430	0.87[EUR][1000 genomes]
rs7099515	0.87[EUR][1000 genomes]
rs73325155	0.87[EUR][1000 genomes]
rs73325195	0.87[EUR][1000 genomes]
rs74150947	0.87[EUR][1000 genomes]
rs7896068	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7900437	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7903143	0.85[EUR][1000 genomes]
rs7915682	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7919673	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7101227	TCTN3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:97469400-97475600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:97470000-97476200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:97471800-97480000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97472600-97476400	Weak transcription	Placenta	Placenta

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