Variant report

Variant	rs7919673
Chromosome Location	chr10:97479056-97479057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10882623	0.87[EUR][1000 genomes]
rs10882624	0.87[EUR][1000 genomes]
rs10882626	0.87[EUR][1000 genomes]
rs10882627	0.87[EUR][1000 genomes]
rs10882628	0.87[EUR][1000 genomes]
rs10882629	0.87[EUR][1000 genomes]
rs10882630	0.87[EUR][1000 genomes]
rs10882631	0.87[EUR][1000 genomes]
rs10882632	0.87[EUR][1000 genomes]
rs10882633	0.85[EUR][1000 genomes]
rs10882634	0.87[EUR][1000 genomes]
rs10882635	0.85[EUR][1000 genomes]
rs11188366	0.87[EUR][1000 genomes]
rs11188368	0.87[EUR][1000 genomes]
rs11188369	0.87[EUR][1000 genomes]
rs11188370	0.87[EUR][1000 genomes]
rs11188371	0.87[EUR][1000 genomes]
rs11188376	0.87[EUR][1000 genomes]
rs11541780	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11542152	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12218873	0.87[EUR][1000 genomes]
rs12242866	0.87[EUR][1000 genomes]
rs12242918	0.87[EUR][1000 genomes]
rs12242923	0.87[EUR][1000 genomes]
rs12248661	0.87[EUR][1000 genomes]
rs12250514	0.87[EUR][1000 genomes]
rs12255572	0.87[EUR][1000 genomes]
rs3176887	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3176892	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176893	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181116	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181118	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181125	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3181127	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35168849	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291572	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62625035	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073436	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084606	0.87[EUR][1000 genomes]
rs7086374	0.82[EUR][1000 genomes]
rs7097236	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099430	0.87[EUR][1000 genomes]
rs7099515	0.87[EUR][1000 genomes]
rs7101227	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73325155	0.87[EUR][1000 genomes]
rs73325195	0.87[EUR][1000 genomes]
rs74150947	0.87[EUR][1000 genomes]
rs7896068	0.87[EUR][1000 genomes]
rs7900437	0.81[EUR][1000 genomes]
rs7903143	0.85[EUR][1000 genomes]
rs7915682	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7919673	TCTN3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:97471800-97480000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:97475600-97484400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:97476800-97481400	Weak transcription	Esophagus	oesophagus
5	chr10:97478800-97480400	Enhancers	Placenta	Placenta

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