Variant report

Variant	rs7086185
Chromosome Location	chr10:4343047-4343048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10795151	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10795152	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10795155	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1926787	0.80[EUR][1000 genomes]
rs4475832	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4881315	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7071086	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7096543	0.85[EUR][1000 genomes]
rs7901676	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9423528	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522540	chr10:4343047-4348396	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
2	chr10:4337800-4345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:4337800-4349200	Weak transcription	Fetal Heart	heart
4	chr10:4338800-4343600	Weak transcription	Fetal Brain Male	brain
5	chr10:4342600-4344000	Enhancers	Fetal Lung	lung
6	chr10:4342800-4350600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:4343000-4344400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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