Variant report
| Variant | rs7089198 |
|---|---|
| Chromosome Location | chr10:50583385-50583386 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs17009596 | 1.00[AMR][1000 genomes] |
| rs17009606 | 1.00[AMR][1000 genomes] |
| rs17009626 | 1.00[AMR][1000 genomes] |
| rs4253056 | 1.00[YRI][hapmap] |
| rs58131680 | 1.00[AMR][1000 genomes] |
| rs61404400 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73305890 | 1.00[AMR][1000 genomes] |
| rs73307805 | 1.00[AMR][1000 genomes] |
| rs73307810 | 1.00[AMR][1000 genomes] |
| rs73307874 | 1.00[AMR][1000 genomes] |
| rs73307884 | 1.00[AMR][1000 genomes] |
| rs73307885 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv526843 | chr10:50570544-50585177 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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