Variant report

Variant	rs7090987
Chromosome Location	chr10:61367054-61367055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11006590	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11006592	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12268265	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862307	0.87[EUR][1000 genomes]
rs7087413	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437684	chr10:61354446-61367720	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1049492	chr10:61357609-61368880	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1814710	chr10:61362321-61367131	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3325439	chr10:61364571-61367119	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61362000-61368600	Weak transcription	Placenta	Placenta
2	chr10:61366000-61367400	Enhancers	Brain Germinal Matrix	brain
3	chr10:61366200-61369000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:61366400-61368400	Enhancers	Fetal Intestine Large	intestine
5	chr10:61366600-61367200	Weak transcription	Fetal Brain Male	brain
6	chr10:61366600-61367200	Weak transcription	Fetal Intestine Small	intestine
7	chr10:61366800-61367200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:61366800-61367800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:61367000-61368000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:61367000-61368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:61367000-61368400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:61367000-61368400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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