Variant report
| Variant | rs61862307 |
|---|---|
| Chromosome Location | chr10:61374392-61374393 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10458677 | 0.97[ASN][1000 genomes] |
| rs10509108 | 0.97[ASN][1000 genomes] |
| rs10740776 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10826320 | 0.97[ASN][1000 genomes] |
| rs10826321 | 0.97[ASN][1000 genomes] |
| rs10826324 | 0.97[ASN][1000 genomes] |
| rs10826325 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11006577 | 0.95[ASN][1000 genomes] |
| rs11006586 | 0.97[ASN][1000 genomes] |
| rs11006589 | 0.97[ASN][1000 genomes] |
| rs11006593 | 0.97[ASN][1000 genomes] |
| rs11006605 | 0.99[ASN][1000 genomes] |
| rs12217745 | 0.97[ASN][1000 genomes] |
| rs12218834 | 0.97[ASN][1000 genomes] |
| rs12268265 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12570492 | 0.97[ASN][1000 genomes] |
| rs4341489 | 0.97[ASN][1000 genomes] |
| rs7087413 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7090987 | 0.87[EUR][1000 genomes] |
| rs7099911 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv467290 | chr10:61358382-61378404 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv467291 | chr10:61358382-61378404 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv551151 | chr10:61358382-61378404 | Weak transcription Flanking Active TSS Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61374000-61374400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
| 2 | chr10:61374200-61377600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
