Variant report

Variant	rs11006605
Chromosome Location	chr10:61375322-61375323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10458677	0.96[ASN][1000 genomes]
rs10509108	0.96[ASN][1000 genomes]
rs10740776	0.95[ASN][1000 genomes]
rs10826320	0.96[ASN][1000 genomes]
rs10826321	0.96[ASN][1000 genomes]
rs10826324	0.96[ASN][1000 genomes]
rs10826325	0.95[ASN][1000 genomes]
rs11006577	0.94[ASN][1000 genomes]
rs11006586	0.96[ASN][1000 genomes]
rs11006589	0.96[ASN][1000 genomes]
rs11006593	0.96[ASN][1000 genomes]
rs12217745	0.96[ASN][1000 genomes]
rs12218834	0.96[ASN][1000 genomes]
rs12268265	0.99[ASN][1000 genomes]
rs12570492	0.96[ASN][1000 genomes]
rs4341489	0.96[ASN][1000 genomes]
rs61862307	0.99[ASN][1000 genomes]
rs7087413	0.96[ASN][1000 genomes]
rs7099911	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61374200-61377600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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