Variant report

Variant	rs10509108
Chromosome Location	chr10:61340890-61340891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10458677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740776	0.99[ASN][1000 genomes]
rs10826320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826324	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10826325	0.99[ASN][1000 genomes]
rs11006577	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006586	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006589	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006593	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11006605	0.96[ASN][1000 genomes]
rs12217745	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12218834	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268265	0.97[ASN][1000 genomes]
rs12570492	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4341489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862307	0.97[ASN][1000 genomes]
rs7087413	1.00[ASN][1000 genomes]
rs7099911	1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61339000-61341600	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr10:61340000-61341000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:61340000-61341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:61340000-61341800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:61340000-61341800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:61340000-61342600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:61340200-61341400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:61340200-61341400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:61340200-61341600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:61340200-61341800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:61340200-61341800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:61340200-61341800	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:61340200-61342600	Weak transcription	Fetal Lung	lung
14	chr10:61340200-61342600	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
17	chr10:61340400-61342400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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